Structure Selector Results

Your Job ID is 1505091086, the file will be deleted in 7 days

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Dataset Name: 1505091086

Puechmaille Method

Puechmaille, S. J. (2016),The program structure does not reliably recover the correct population structure when sampling is uneven: subsampling and new estimators alleviate the problem. Molecular Ecology Resources, 16: 608–627. [link]

MedMeaK, MaxMeaK, MedMedK, MaxMedK (Threshold=0.5):

K	MedMed	MedMean	MaxMed	MaxMean	Reps
1	1	1	1	1	10
2	2	2	2	2	10
3	3	3	3	3	10
4	4	4	4	4	10
5	5	5	5	5	10
6	5	5	6	5	10
7	4	4	5	4	10
8	3	3	4	3	10
	MedMedK	MedMeaK	MaxMedK	MaxMeaK
ALL	5	5	6	5

download table 1505091086.MedK.0.5.tsv

download plots 1505091086.MedK.0.5.pdf

MedMeaK, MaxMeaK, MedMedK, MaxMedK (Threshold=0.6):

K	MedMed	MedMean	MaxMed	MaxMean	Reps
1	1	1	1	1	10
2	2	2	2	2	10
3	3	3	3	3	10
4	4	4	4	4	10
5	4	4	4	4	10
6	4	3	4	3	10
7	3	2	3	3	10
8	3	2	3	2	10
	MedMedK	MedMeaK	MaxMedK	MaxMeaK
ALL	4	4	4	4

download table 1505091086.MedK.0.6.tsv

download plots 1505091086.MedK.0.6.pdf

MedMeaK, MaxMeaK, MedMedK, MaxMedK (Threshold=0.7):

K	MedMed	MedMean	MaxMed	MaxMean	Reps
1	1	1	1	1	10
2	2	2	2	2	10
3	3	3	3	3	10
4	4	1	4	2	10
5	4	2	4	2	10
6	3	1	3	1	10
7	3	0	3	0	10
8	2	0	3	0	10
	MedMedK	MedMeaK	MaxMedK	MaxMeaK
ALL	4	3	4	3

download table 1505091086.MedK.0.7.tsv

download plots 1505091086.MedK.0.7.pdf

MedMeaK, MaxMeaK, MedMedK, MaxMedK (Threshold=0.8):

K	MedMed	MedMean	MaxMed	MaxMean	Reps
1	1	1	1	1	10
2	2	1	2	2	10
3	3	0	3	0	10
4	1	0	3	0	10
5	2	0	3	0	10
6	2	0	2	0	10
7	0	0	2	0	10
8	0	0	0	0	10
	MedMedK	MedMeaK	MaxMedK	MaxMeaK
ALL	3	1	3	2

download table 1505091086.MedK.0.8.tsv

download plots 1505091086.MedK.0.8.pdf

Evanno method

Evanno et al. (2005), Detecting the number of clusters of individuals using the software structure: a simulation study Molecular Ecology, 14: 2611–2620. [link]

DeltaK:

K	Reps	Mean LnP(K)	Stdev LnP(K)	Ln'(K)	\|Ln''(K)\|	Delta K
1	10	-18904.83000	0.48086	NA	NA	NA
2	10	-18765.18000	2.85143	139.65000	37.75000	13.23896
3	10	-18663.28000	5.39872	101.90000	32.39000	5.99957
4	10	-18593.77000	11.02503	69.51000	33.27000	3.01768
5	10	-18490.99000	6.75038	102.78000	86.53000	12.81853
6	10	-18474.74000	14.62275	16.25000	10.57000	0.72285
7	10	-18447.92000	21.03309	26.82000	35.98000	1.71064
8	10	-18385.12000	11.29895	62.80000	NA	NA

download table 1505091086.DeltaK.tsv

download plots 1505091086.DeltaK.pdf

download plots 1505091086.LnPK.pdf

Choose K Method

Anil Raj, Matthew Stephens, and Jonathan K. Pritchard. (2014), fastSTRUCTURE: Variational Inference of Population Structure in Large SNP Data Sets, Genetics, 197:573-589 [link]

Model components used to explain structure in data is 1

Select specific K = to generate graphical representations

Computational:

Search method:

CLUMPP: default parameters are the LargeKGreedy algorithm, random input order, and 2000 repeats

Full search
Greedy
LargeKGreedy

Please choose the number of random input orders repeats:

MCL: threshold for similarity scores:

Default (dynamic)

User Defined: (0≤X<1)

DISTRUCT: threshold for minimal cluster size:

Default

User Defined: (0≤X<1)

Graphical:

Upload a drawparams file (optional): example

Upload a colors file (optional): example

Email:

CAS Key Laboratory of Marine Ecology and Environmental Sciences
Institute of Oceanology Chinese Academy of Sciences
7 Nanhai Road, Qingdao 266071
Shandong, China
P: (86) 0532-82898894