Download all tables and plots

Dataset Name: 1505091426

Puechmaille Method

Puechmaille, S. J. (2016),The program structure does not reliably recover the correct population structure when sampling is uneven: subsampling and new estimators alleviate the problem. Molecular Ecology Resources, 16: 608–627. [link]
MedMeaK, MaxMeaK, MedMedK, MaxMedK (Threshold=0.5):
KMedMedMedMeanMaxMedMaxMeanReps
111111
222221
322221
422221
522221
611111
711111
810101
MedMedKMedMeaKMaxMedKMaxMeaK
ALL2222

download table 1505091426.MedK.0.5.tsv

Responsive image

download plots 1505091426.MedK.0.5.pdf


MedMeaK, MaxMeaK, MedMedK, MaxMedK (Threshold=0.6):
KMedMedMedMeanMaxMedMaxMeanReps
111111
222221
321211
410101
510101
600001
700001
800001
MedMedKMedMeaKMaxMedKMaxMeaK
ALL2222

download table 1505091426.MedK.0.6.tsv

Responsive image

download plots 1505091426.MedK.0.6.pdf


MedMeaK, MaxMeaK, MedMedK, MaxMedK (Threshold=0.7):
KMedMedMedMeanMaxMedMaxMeanReps
111111
211111
310101
400001
500001
600001
700001
800001
MedMedKMedMeaKMaxMedKMaxMeaK
ALL1111

download table 1505091426.MedK.0.7.tsv

Responsive image

download plots 1505091426.MedK.0.7.pdf


MedMeaK, MaxMeaK, MedMedK, MaxMedK (Threshold=0.8):
KMedMedMedMeanMaxMedMaxMeanReps
111111
210101
300001
400001
500001
600001
700001
800001
MedMedKMedMeaKMaxMedKMaxMeaK
ALL1111

download table 1505091426.MedK.0.8.tsv

Responsive image

download plots 1505091426.MedK.0.8.pdf


Likelihood:

Responsive

download plots 1505091426.likelihood.pdf

Responsive

download plots 1505091426.cv.pdf


Choose K Method

Anil Raj, Matthew Stephens, and Jonathan K. Pritchard. (2014), fastSTRUCTURE: Variational Inference of Population Structure in Large SNP Data Sets, Genetics, 197:573-589 [link]

Select specific K = to generate graphical representations


Computational:

Search method:

CLUMPP: default parameters are the LargeKGreedy algorithm, random input order, and 2000 repeats

Full search
Greedy
LargeKGreedy
Please choose the number of random input orders repeats:

MCL: threshold for similarity scores:

Default (dynamic)
User Defined: (0≤X<1) 

DISTRUCT: threshold for minimal cluster size:

Default
User Defined: (0≤X<1) 

Graphical:

Upload a file (optional): example
Upload a file (optional): example


CAS Key Laboratory of Marine Ecology and Environmental Sciences
Institute of Oceanology Chinese Academy of Sciences
7 Nanhai Road, Qingdao 266071
Shandong, China
P: (86) 0532-82898894